Stories
Slash Boxes
Comments

SoylentNews is people

posted by Fnord666 on Sunday April 16 2017, @02:14AM   Printer-friendly
from the jelly-and-sponge-issue-resolved dept.

Researchers have determined that comb jellies came before sponges by analyzing the appearance and placement of genes throughout the branches of life:

For the last decade, zoologists have been battling over the question, "What was the oldest branch of the animal family tree?" Was it the sponges, as they had long thought, or was it a distinctly different set of creatures, the delicate marine predators called comb jellies? The answer to this question could have a major impact on scientists' thinking about how the nervous system, digestive tract, and other basic organs in modern animals evolved.

Now, a team of evolutionary biologists from Vanderbilt University and the University of Wisconsin-Madison have devised a new approach designed specifically to settle contentious phylogenetic tree-of-life issues like this. The new approach comes down squarely on the side of comb jellies.

The method and its application to this and 17 other controversial phylogenetic relationships were published online April 10 by the journal Nature Ecology & Evolution. The article is titled "Resolution of contentious relationships in phylogenomic studies can be driven by one or a handful of genes."

Contentious relationships in phylogenomic studies can be driven by a handful of genes (DOI: 10.1038/s41559-017-0126) (DX)

Phylogenomic studies have resolved countless branches of the tree of life, but remain strongly contradictory on certain, contentious relationships. Here, we use a maximum likelihood framework to quantify the distribution of phylogenetic signal among genes and sites for 17 contentious branches and 6 well-established control branches in plant, animal and fungal phylogenomic data matrices. We find that resolution in some of these 17 branches rests on a single gene or a few sites, and that removal of a single gene in concatenation analyses or a single site from every gene in coalescence-based analyses diminishes support and can alter the inferred topology. These results suggest that tiny subsets of very large data matrices drive the resolution of specific internodes, providing a dissection of the distribution of support and observed incongruence in phylogenomic analyses. We submit that quantifying the distribution of phylogenetic signal in phylogenomic data is essential for evaluating whether branches, especially contentious ones, are truly resolved. Finally, we offer one detailed example of such an evaluation for the controversy regarding the earliest-branching metazoan phylum, for which examination of the distributions of gene-wise and site-wise phylogenetic signal across eight data matrices consistently supports ctenophores as the sister group to all other metazoans.


Original Submission

 
This discussion has been archived. No new comments can be posted.
Display Options Threshold/Breakthrough Mark All as Read Mark All as Unread
The Fine Print: The following comments are owned by whoever posted them. We are not responsible for them in any way.