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posted by mrpg on Friday August 10 2018, @09:10AM   Printer-friendly
from the yes dept.

Biologists who last year made a blockbuster — but controversial — claim that they had fixed a disease-causing mutation in human embryos using CRISPR gene editing have released fresh evidence in support of their work. Critics argued that the researchers’ evidence wasn’t persuasive and that the feat did not seem biologically plausible, intensifying the existing controversy surrounding the use of gene editing in human embryos to prevent diseases.

Now, a year after the study was published in Nature1, its authors, led by reproductive biologist Shoukhrat Mitalipov at the Oregon Health & Science University in Portland, have backed up their claims with new data2, published on 8 August alongside a pair of letters critiquing the original results.3,4.

Whatever happens next, it is likely that questions about whether it is possible to repair mutations in human embryos will persist until other researchers can repeat the feat — no easy task in a field that is strictly regulated, and even illegal in some countries.

Did CRISPR really fix a genetic mutation in these human embryos?


Original Submission

Related Stories

"VIVO" Method Limits CRISPR/Cas9 Off-Target Mutations 1 comment

New Technique Limits CRISPR-Cas9 Off-Target Mutations: A mouse study details a method called VIVO that predicts the accuracy of any guide RNA.

One of the barriers to using CRISPR-Cas9 gene editing in the clinic is the possibility that the enzyme will clip DNA in the wrong spot. In a study published in Nature [DOI: 10.1038/s41586-018-0500-9] [DX] today (September 12), researchers describe a strategy to predict these off-target mutations throughout the genome and show in mice that a carefully designed guide RNA strand does not produce any detectable slip-ups.

The study confirms that "you'd better make sure that you've got a really accurate guide RNA," says Janet Rossant, a developmental biologist at the University of Toronto and the Hospital for Sick Children who did not participate in the work. "This [method] is a better way of testing for how specific that guide RNA will be before you go into animal models and, of course, into humans," she adds.

According to coauthor Marcello Maresca, a biologist at AstraZeneca in Sweden, one long-term goal of his company is to be able to use therapeutic gene editing to address a number of human diseases. "However, realizing the potential of CRISPR medicines requires the development of methods to enable the efficient modification of the target gene with no effects elsewhere in the genome," he writes in an email to The Scientist.

VIVO = "verification of in vivo off-targets".

Related: CRISPR Safer than Thought; Misleading Study Found Shared Mutations in Closely Related Mice
CRISPR Becomes More Precise
Paper That Found CRISPR "Off-Target Effects" Retracted
Repair of Double-Strand Breaks Induced by CRISPR Leads to Large Deletions and Complex Rearrangements
Did CRISPR Really Fix a Genetic Mutation in These Human Embryos?


Original Submission

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  • (Score: 2) by MichaelDavidCrawford on Friday August 10 2018, @10:09AM

    by MichaelDavidCrawford (2339) Subscriber Badge <mdcrawford@gmail.com> on Friday August 10 2018, @10:09AM (#719851) Homepage Journal

    - First.

    Genetic Counselors don't do DNA tests. They ask lots of odd questions such as what color hair the women in your family tend to have.

    In the case of Lorenzo Odone, all the women in his mother's family had red hair. That and some other traits enabled a genetic counselor to diagnose Lorenzo's adrenoleukodystrophy.

    That very rare genetic disease causes a buildup of a certain fatty acid in the blood. To much lipid in your blood and it will dissolve away the myelin sheaths that electrically insulate your nerves from your blood stream. That results in your pain receptors constantly firing.

    It only struck young boys, and they always died by the age of twelve.

    his parents Augusta and Michaela found an effective treatment by hanging out in a medical library for years on end: a highly-refined fatty acid.

    If the human body doesn't get enough fatty acid Foo, then it will mistakenly produce fatty acid Bar. IIRC the buildup of Bar results from the body's inability to eliminate it. Or something like that. It's been a long time since I saw "Lorenzo's Oil".

    That I took a date to such a tragic movie had me wanting to crawl under my seat but in the end she told me she got heavily into it.

    At the very end they show a whole bunch of like boys saying "My name is $GIVEN_NAME and I take Lorenzo's Oil".

    --
    Yes I Have No Bananas. [gofundme.com]
  • (Score: 3, Interesting) by Anonymous Coward on Friday August 10 2018, @10:33AM (4 children)

    by Anonymous Coward on Friday August 10 2018, @10:33AM (#719859)

    Not fixing something like downs syndrome is morally equivalent to genetically engineering your child to have it.

    • (Score: 0) by Anonymous Coward on Friday August 10 2018, @11:01AM (1 child)

      by Anonymous Coward on Friday August 10 2018, @11:01AM (#719862)

      I doubt you could fix Down's with CRISPR since it is more than just a bad gene. Instead it's an entire chromosome that is duplicated (present as a triple).

      • (Score: 0) by Anonymous Coward on Friday August 10 2018, @11:24AM

        by Anonymous Coward on Friday August 10 2018, @11:24AM (#719870)

        Good point, but I didn't specifically intend to make a point about either down's or CRISPR. At present off target effects provide sufficient concern to make using CRISPR on cells which will become gametes a bad idea anyway. The intended point applies just as much to screening for the sake of abortion as genetic engineering. I was just triggered by being reminded that it's controversial to heal people in this way.

    • (Score: 0) by Anonymous Coward on Friday August 10 2018, @10:31PM (1 child)

      by Anonymous Coward on Friday August 10 2018, @10:31PM (#720098)

      Using your logic, we're a generation away from a negro-free Anerica?

      • (Score: 0) by Anonymous Coward on Saturday August 11 2018, @10:38PM

        by Anonymous Coward on Saturday August 11 2018, @10:38PM (#720374)

        Allowing a baby to be born black is morally equivalent to ensuring it is born black.

        I see no problem with ensuring a baby is a particular race, provided that it'll live in a society which treats that race well.

  • (Score: 0) by Anonymous Coward on Friday August 10 2018, @11:19AM (2 children)

    by Anonymous Coward on Friday August 10 2018, @11:19AM (#719869)

    The paper in question was reported here: https://soylentnews.org/article.pl?sid=17/08/03/0245212 [soylentnews.org]
    And critique here: https://soylentnews.org/article.pl?sid=17/09/13/0124206 [soylentnews.org]

    Also, here is what I said within an hour of seeing it:

    Using sperm from a man with hypertrophic cardiomyopathy and eggs from 12 healthy women, the researchers created fertilized eggs. Injecting CRISPR-Cas9, which works as a genetic scissors, they snipped out the mutated DNA sequence on the male MYBPC3 gene.

            They injected a synthetic healthy DNA sequence into the fertilized egg, expecting that the male genome would copy that sequence into the cut portion. That is how this gene-editing process works in other cells in the body, and in mouse embryos, Dr. Mitalipov said.

            Instead, the male gene copied the healthy sequence from the female gene. The authors don’t know why it happened.

            [...]

            The researchers also discovered something unexpected: a previously unknown way that embryos repair themselves.

            In other cells in the body, the editing process is carried out by genes that copy a DNA template introduced by scientists. In these embryos, the sperm cell’s mutant gene ignored that template and instead copied the healthy DNA sequence from the egg cell.

            “We were so surprised that we just couldn’t get this template that we made to be used,” said Shoukhrat Mitalipov, director of the Center for Embryonic Cell and Gene Therapy at Oregon Health and Science University and senior author of the study. “It was very new and unusual.”

    https://www.nytimes.com/2017/08/02/science/gene-editing-human-embryos.html [nytimes.com] [nytimes.com]

    Even more remarkably, the majority of targeted blastomeres (63.6%, 35/55) resolved the DSBs by HDR using the wild-type allele, also markedly different from what was seen in iPSCs (Fig. 2d and Extended Data Fig. 2a). We did not find any evidence of HDR using exogenous ssODN, suggesting that HDR is guided exclusively by the wild-type maternal allele.

    https://www.nature.com/nature/journal/vaop/ncurrent/full/nature23305.html [nature.com] [nature.com]

    So they had 70 zygotes (extended data table 2) that were about 50/50 wt (wildtype) and mutant (the sperm were from a heterozygous guy). They ended up with 36/54 wt embryos (fig 2a), when they had ~35 wt zygotes to start with. Doesn't this sound like they just killed/damaged 16 of the mutant zygotes since they targeted an enzyme that damages DNA to cells with the mutant sequence? Wouldn't this also explain their strange, surprising result that the "edited" cells contained WT sequence rather than the one they injected into the cells?

    This all seems very straightforward to me with no mysteries, surprises, remarkable findings, or anything unusual other than the fact they insist that some kind of "editing" is going on...

    This current work just shows they didnt detect any large deletions, which does go against the alternative explanation in the critique but not mine (which is by far the most simple explanation for these results).

    The other thing they show is that there was some loss of heterogeneity (ie dad had a C at a certain site while mom had a T so embryo should have C/T, but they saw T/T) around the "edit" site which they attribute to the maternal sequence being used to replace the paternal one. This could mean something but they don't have any controls for some inexplicable reason. How often did this happen at sites not near the "edit" site, etc.

    • (Score: 0) by Anonymous Coward on Friday August 10 2018, @02:50PM (1 child)

      by Anonymous Coward on Friday August 10 2018, @02:50PM (#719928)

      I hope for their sakes that the donors of the sperm were dead. Unconditional child support liability being created in the lab here.

      • (Score: 0) by Anonymous Coward on Friday August 10 2018, @03:13PM

        by Anonymous Coward on Friday August 10 2018, @03:13PM (#719939)

        There was only one bonor:

        sperm from a man with hypertrophic cardiomyopathy

  • (Score: 0) by Anonymous Coward on Friday August 10 2018, @08:09PM

    by Anonymous Coward on Friday August 10 2018, @08:09PM (#720057)

    Anticlimactic sonofabitch.

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