████ # This file was generated bot-o-matically! Edit at your own risk. ████
Blood groups of Neandertals and Denisova decrypted [plos.org]:
References
- 1. Slatkin M, Racimo F. Ancient DNA and human history. Proc Natl Acad Sci U S A. 2016;113(23):6380–7. pmid:27274045
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 2. Rogers AR, Harris NS, Achenbach AA. Neanderthal-Denisovan ancestors interbred with a distantly related hominin. Sci Adv. 2020;6(8):eaay5483. pmid:32128408
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 3. Rees JS, Castellano S, Andrés AM. The Genomics of Human Local Adaptation. Trends Genet. 2020;36(6):415–28. pmid:32396835
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 4. Bégat C, Bailly P, Chiaroni J, Mazieres S. Revisiting the Diego Blood Group System in Amerindians: Evidence for Gene-Culture Comigration. PLoS One. 2015;10(7):e0132211. pmid:26148209
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 5. Anstee DJ. The relationship between blood groups and disease. Blood. 2010;115(23):4635–43. pmid:20308598
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 6. Fumagalli M, Cagliani R, Pozzoli U, Riva S, Comi GP, Menozzi G, et al. Widespread balancing selection and pathogen-driven selection at blood group antigen genes. Genome Res. 2009;19(2):199–212. pmid:18997004
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 7. Cavalli-Sforza LL, Menozzi P, Piazza A. The history and geography of human genes. Press PU, editor. Princeton: Princeton University Press; 1994. 432 p.
- 8. Carritt B, Kemp TJ, Poulter M. Evolution of the human RH (rhesus) blood group genes: a 50 year old prediction (partially) fulfilled. Hum Mol Genet. 1997;6(6):843–50. pmid:9175729
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 9. Kitano T, Blancher A, Saitou N. The functional A allele was resurrected via recombination in the human ABO blood group gene. Mol Biol Evol. 2012;29(7):1791–6. pmid:22319172
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 10. Reid ME, Lomas-Francis C, Olsson ML. The Blood Group Antigen Factsbook. 3rd ed. New York: Elsevier Academic Press; 2012. 758 p.
- 11. Möller M, Jöud M, Storry JR, Olsson ML. Erythrogene: a database for in-depth analysis of the extensive variation in 36 blood group systems in the 1000 Genomes Project. Blood Advances. 2016;1(3):240–9. pmid:29296939
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 12. Lalueza-Fox C, Gigli E, de la Rasilla M, Fortea J, Rosas A, Bertranpetit J, et al. Genetic characterization of the ABO blood group in Neandertals. BMC Evol Biol. 2008;8:342. pmid:19108732
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 13. Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, et al. A high-coverage genome sequence from an archaic Denisovan individual. Science. 2012;338(6104):222–6. pmid:22936568
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 14. Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature. 2014;505(7481):43–9. pmid:24352235
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 15. Prüfer K, de Filippo C, Grote S, Mafessoni F, Korlević P, Hajdinjak M, et al. A high-coverage Neandertal genome from Vindija Cave in Croatia. Science. 2017;358(6363):655–8. pmid:28982794
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 16. Mafessoni F, Grote S, de Filippo C, Slon V, Kolobova KA, Viola B, et al. A high-coverage Neandertal genome from Chagyrskaya Cave. Proc Natl Acad Sci U S A. 2020. pmid:32546518
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 17. Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, et al. The variant call format and VCFtools. Bioinformatics. 2011;27(15):2156–8. pmid:21653522
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 18. Yamamoto F, Clausen H, White T, Marken J, Hakomori S. Molecular genetic basis of the histo-blood group ABO system. Nature. 1990;345(6272):229–33. pmid:2333095
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 19. Yamamoto F, Hakomori S. Sugar-nucleotide donor specificity of histo-blood group A and B transferases is based on amino acid substitutions. J Biol Chem. 1990;265(31):19257–62. pmid:2121736
- View Article
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 20. Yip SP. Sequence variation at the human ABO locus. Ann Hum Genet. 2002;66(Pt 1):1–27. pmid:12014997
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 21. Kelly RJ, Rouquier S, Giorgi D, Lennon GG, Lowe JB. Sequence and expression of a candidate for the human Secretor blood group alpha(1,2)fucosyltransferase gene (FUT2). Homozygosity for an enzyme-inactivating nonsense mutation commonly correlates with the non-secretor phenotype. J Biol Chem. 1995;270(9):4640–9. pmid:7876235
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 22. Wagner FF, Flegel WA. The Rhesus Site. Transfus Med Hemother. 2014;41(5):357–63. pmid:25538538
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 23. Thorvaldsdóttir H, Robinson JT, Mesirov JP. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. 2013;14(2):178–92. pmid:22517427
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 24. Sousa V, Hey J. Understanding the origin of species with genome-scale data: modelling gene flow. Nat Rev Genet. 2013;14(6):404–14. pmid:23657479
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 25. Günther T, Nettelblad C. The presence and impact of reference bias on population genomic studies of prehistoric human populations. PLoS Genet. 2019;15(7):e1008302. pmid:31348818
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 26. Koda Y, Ishida T, Tachida H, Wang B, Pang H, Soejima M, et al. DNA sequence variation of the human ABO-secretor locus (FUT2) in New Guinean populations: possible early human migration from Africa. Hum Genet. 2003;113(6):534–41. pmid:14569463
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 27. Ferrer-Admetlla A, Sikora M, Laayouni H, Esteve A, Roubinet F, Blancher A, et al. A natural history of FUT2 polymorphism in humans. Mol Biol Evol. 2009;26(9):1993–2003. pmid:19487333
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 28. Consortium GK. The GenomeAsia 100K Project enables genetic discoveries across Asia. Nature. 2019;576(7785):106–11. pmid:31802016
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 29. Schoeman EM, Roulis EV, Perry MA, Flower RL, Hyland CA. Comprehensive blood group antigen profile predictions for Western Desert Indigenous Australians from whole exome sequence data. Transfusion. 2019;59(2):768–78. pmid:30520525
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 30. Wagner FF, Flegel WA. RHD gene deletion occurred in the Rhesus box. Blood. 2000;95(12):3662–8. pmid:10845894
- View Article
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 31. Deleers M, Thonier V, Claes V, Daelemans C, Peyrard T, El Kenz H. A Tutsi family harbouring two new RHCE variant alleles and a new haplotype in the Rh blood group system. Vox Sang. 2020. pmid:32196693
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 32. Moores P. Rh18 and hrS blood groups and antibodies. Vox Sang. 1994;66(3):225–30. pmid:8036793
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 33. Mounier A, Marchal F, Condemi S. Is Homo heidelbergensis a distinct species? New insight on the Mauer mandible. J Hum Evol. 2009;56(3):219–46. pmid:19249816
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 34. BarYosef O, Goren-Inbar N. The lithic assemblages of ʻUbeidiya: A lower palaeolithic site in the Jordan Valley (Qedem). Jcrusalem. THUo, editor. Jerusalem: Institute of Archaeology, Hebrew University of Jerusalem; 1993. 266 p.
- 35. Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, et al. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature. 2010;468(7327):1053–60. pmid:21179161
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 36. Sawyer S, Renaud G, Viola B, Hublin JJ, Gansauge MT, Shunkov MV, et al. Nuclear and mitochondrial DNA sequences from two Denisovan individuals. Proc Natl Acad Sci U S A. 2015;112(51):15696–700. pmid:26630009
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 37. Bocquet-Appel J-P, Degioanni A. Neanderthal Demographic Estimates. Current Anthropology. 2013;NS 8:S202–S13.
- View Article
- Google Scholar [google.com]
- 38. Kolobova KA, Roberts RG, Chabai VP, Jacobs Z, Krajcarz MT, Shalagina AV, et al. Archaeological evidence for two separate dispersals of Neanderthals into southern Siberia. Proc Natl Acad Sci U S A. 2020;117(6):2879–85. pmid:31988114
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 39. Bokelmann L, Hajdinjak M, Peyrégne S, Brace S, Essel E, de Filippo C, et al. A genetic analysis of the Gibraltar Neanderthals. Proc Natl Acad Sci U S A. 2019;116(31):15610–5. pmid:31308224
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 40. Trinkaus E. An abundance of developmental anomalies and abnormalities in Pleistocene people. Proc Natl Acad Sci U S A. 2018;115(47):11941. pmid:30397116
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 41. Tournamille C, Blancher A, Le Van Kim C, Gane P, Apoil PA, Nakamoto W, et al. Sequence, evolution and ligand binding properties of mammalian Duffy antigen/receptor for chemokines. Immunogenetics. 2004;55(10):682–94. pmid:14712331
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 42. Jarolim P, Rubin Hl Fau—Zhai S, Zhai S Fau—Sahr KE, Sahr Ke Fau—Liu SC, Liu Sc Fau—Mueller TJ, Mueller Tj Fau—Palek J, et al. Band 3 Memphis: a widespread polymorphism with abnormal electrophoretic mobility of erythrocyte band 3 protein caused by substitution AAG----GAG (Lys----Glu) in codon 56. Blood. 1992;80(0006–4971 (Print)):1592–8. pmid:1520883
- View Article
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 43. Posth C, Wißing C, Kitagawa K, Pagani L, van Holstein L, Racimo F, et al. Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals. Nature Communications. 2017;8:16046. pmid:28675384
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 44. Groucutt HS, Grün R, Zalmout IAS, Drake NA, Armitage SJ, Candy I, et al. Homo sapiens in Arabia by 85,000 years ago. Nat Ecol Evol. 2018;2(5):800–9. pmid:29632352
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 45. Clarkson C, Jacobs Z, Marwick B, Fullagar R, Wallis L, Smith M, et al. Human occupation of northern Australia by 65,000 years ago. Nature. 2017;547(7663):306–10. pmid:28726833
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 46. Choin J, Mendoza-Revilla J, Arauna LR, Cuadros-Espinoza S, Cassar O, Larena M, et al. Genomic insights into population history and biological adaptation in Oceania. Nature. 2021;592(7855):583–9. pmid:33854233
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 47. Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, et al. Insights into human genetic variation and population history from 929 diverse genomes. Science. 2020;367(6484). pmid:32193295
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 48. Sankararaman S, Mallick S, Dannemann M, Prüfer K, Kelso J, Pääbo S, et al. The genomic landscape of Neanderthal ancestry in present-day humans. Nature. 2014;507(7492):354–7. pmid:24476815
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 49. Vernot B, Akey JM. Resurrecting surviving Neandertal lineages from modern human genomes. Science. 2014;343(6174):1017–21. pmid:24476670
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 50. Barreiro LB, Quintana-Murci L. Evolutionary and population (epi)genetics of immunity to infection. Hum Genet. 2020. pmid:32285198
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 51. Ségurel L, Gao Z, Przeworski M. Ancestry runs deeper than blood: the evolutionary history of ABO points to cryptic variation of functional importance. Bioessays. 2013;35(10):862–7. pmid:23836453
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 52. Nordgren J, Svensson L. Genetic Susceptibility to Human Norovirus Infection: An Update. Viruses. 2019;11(3). pmid:30845670
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 53. Cooling L. Blood Groups in Infection and Host Susceptibility. Clin Microbiol Rev. 2015;28(3):801–70. pmid:26085552
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 54. Lindesmith L, Moe C, Marionneau S, Ruvoen N, Jiang X, Lindblad L, et al. Human susceptibility and resistance to Norwalk virus infection. Nat Med. 2003;9(5):548–53. pmid:12692541
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 55. van Der Poel WH, Vinjé J, van Der Heide R, Herrera MI, Vivo A, Koopmans MP. Norwalk-like calicivirus genes in farm animals. Emerging Infectious Diseases. 2000;6(1):36–41. pmid:10653567
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 56. Gouy A, Excoffier L. Polygenic Patterns of Adaptive Introgression in Modern Humans Are Mainly Shaped by Response to Pathogens. Mol Biol Evol. 2020;37(5):1420–33. pmid:31935281
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 57. Van Blerkom LM. Role of viruses in human evolution. Am J Phys Anthropol. 2003;Suppl 37(Suppl):14–46. pmid:14666532
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 58. Ríos L, Kivell TL, Lalueza-Fox C, Estalrrich A, García-Tabernero A, Huguet R, et al. Skeletal Anomalies in The Neandertal Family of El Sidrón (Spain) Support A Role of Inbreeding in Neandertal Extinction. Sci Rep. 2019;9(1):1697. pmid:30737446
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 59. Denomme GA, Wagner FF, Fernandes BJ, Li W, Flegel WA. Partial D, weak D types, and novel RHD alleles among 33,864 multiethnic patients: implications for anti-D alloimmunization and prevention. Transfusion. 2005;45(10):1554–60. pmid:16181204
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 60. Jakobsen MA, Nielsen C, Sprogøe U. A case of high-titer anti-D hemolytic disease of the newborn in which late onset and mild course is associated with the D variant, RHD-CE(9)-D. Transfusion. 2014;54(10):2463–7. pmid:24749928
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]
- 61. Degioanni A, Bonenfant C, Cabut S, Condemi S. Living on the edge: Was demographic weakness the cause of Neanderthal demise? PLoS One. 2019;14(5):e0216742. pmid:31141515
- View Article [doi.org]
- PubMed/NCBI [nih.gov]
- Google Scholar [google.com]